Multiple pathways of SARS-CoV-2 nosocomial transmission uncovered by integrated genomic and epidemiological analyses during the second wave of the COVID-19 pandemic in the UK, Cook, K., Beckett, A., Glaysher, S., Goudarzi, S., Fearn, C., Loveson, K., Elliott, S., Wyllie, S., Lloyd, A., Bicknell, K., Lumley, S., Chauhan, A., Robson, S., Smith, D., Bashton, M., Young, G., McCann, C., Nelson, A., Crown, M., Henderson, J., Hollis, A., Stanley, W., Yew, W. 20 Jan 2023, In: Frontiers in cellular and infection microbiology
SARS-CoV-2 variant evasion of monoclonal antibodies based on in vitro studies, Cox, M., Peacock, T., Harvey, W., Hughes, J., Wright, D., Willett, B., Thomson, E., Gupta, R., Peacock, S., Robertson, D., Carabelli, A., Smith, D., Bashton, M., Young, G., McCann, C., Nelson, A., Crown, M., Henderson, J., Hollis, A., Stanley, W., Yew, W. 1 Feb 2023, In: Nature Reviews Microbiology
The Oral Microbiome for Geographic Origin: An Italian Study, Ogbanga, N., Nelson, A., Ghignone, S., Voyron, S., Lovisolo, F., Sguazzi, G., Renò, F., Migliario, M., Gino, S., Procopio, N. 2 Feb 2023, In: Forensic Science International: Genetics
Tracheostomy in children is associated with neutrophilic airway inflammation, Powell, J., Powell, S., Mather, M., Beck, L., Nelson, A., Palmowski, P., Porter, A., Coxhead, J., Hedley, A., Scott, J., Rostron, A., Hellyer, T., Zaidi, F., Davey, T., Garnett, J., Agbeko, R., Ward, C., Stewart, C., Taggart, C., Brodlie, M., Simpson, A. 20 Feb 2023, In: Thorax
Assessment of mortality and hospital admissions associated with confirmed infection with SARS-CoV-2 Alpha variant: a matched cohort and time-to-event analysis, England, October to December 2020, Dabrera, G., Allen, H., Zaidi, A., Flannagan, J., Twohig, K., Thelwall, S., Marchant, E., Aziz, N., Lamagni, T., Myers, R., Charlett, A., Capelastegui, F., Chudasama, D., Clare, T., Coukan, F., Sinnathamby, M., Ferguson, N., Hopkins, S., Chand, M., Hope, R., Kall, M., Bashton, M., Smith, D., Nelson, A., Young, G., McCann, C. 19 May 2022, In: Eurosurveillance
City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 Alpha and Delta variants, Brunner, F., Brown, M., Bassano, I., Denise, H., Khalifa, M., Wade, M., van Aerle, R., Kevill, J., Jones, D., Farkas, K., Jeffries, A., Cairns, E., Wierzbicki, C., Paterson, S., Bashton, M., Smith, D., Nelson, A., Young, G., McCann, C. 1 Nov 2022, In: Water Research
Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 infection early in the pandemic and the role of unidentified cases in transmission, Snell, L., Fisher, C., Taj, U., Stirrup, O., Merrick, B., Alcolea-Medina, A., Charalampous, T., Signell, A., Wilson, H., Betancor, G., Kia Ik, M., Cunningham, E., Cliff, P., Pickering, S., Galao, R., Batra, R., Neil, S., Malim, M., Doores, K., Douthwaite, S., Nebbia, G., Edgeworth, J., Awan, A., Bashton, M., Nelson, A., McCann, C., Young, G., Smith, D. 1 Jan 2022, In: Clinical Microbiology and Infection
Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study, Nyberg, T., Ferguson, N., Nash, S., Webster, H., Flaxman, S., Andrews, N., Hinsley, W., Bernal, J., Kall, M., Bhatt, S., Blomquist, P., Zaidi, A., Volz, E., Aziz, N., Harman, K., Funk, S., Abbott, S., Lopez Bernal, J., Abdul Aziz, N., Hope, R., Charlett, A., Chand, M., Ghani, A., Seaman, S., Dabrera, G., De Angelis, D., Presanis, A., Thelwall, S., Bashton, M., Smith, D., Nelson, A., Young, G., McCann, C. 2 Apr 2022, In: The Lancet
Context-specific emergence and growth of the SARS-CoV-2 Delta variant, McCrone, J., Hill, V., Bajaj, S., Pena, R., Lambert, B., Inward, R., Bhatt, S., Volz, E., Ruis, C., Dellicour, S., Baele, G., Zarebski, A., Sadilek, A., Wu, N., Schneider, A., Ji, X., Raghwani, J., Jackson, B., Colquhoun, R., O'Toole, Á., Peacock, T., Twohig, K., Thelwall, S., Dabrera, G., Myers, R., Faria, N., Huber, C., Bogoch, I., Khan, K., du Plessis, L., Barrett, J., Aanensen, D., Barclay, W., Chand, M., Connor, T., Loman, N., Suchard, M., Pybus, O., Rambaut, A., Kraemer, M., Bashton, M., Smith, D., Nelson, A., Young, G., McCann, C. 6 Oct 2022, In: Nature
COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study, Kläser, K., Molteni, E., Graham, M., Canas, L., Österdahl, M., Antonelli, M., Chen, L., Deng, J., Murray, B., Kerfoot, E., Wolf, J., May, A., Fox, B., Capdevila, J., Aanensen, D., Abudahab, K., Adams, H., Adams, A., Afifi, S., Aggarwal, D., Ahmad, S., Aigrain, L., Alcolea-Medina, A., Alikhan, N., Allara, E., Amato, R., Angyal, A., Annett, T., Aplin, S., Ariani, C., Asad, H., Ash, A., Ashfield, P., Ashford, F., Atkinson, L., Attwood, S., Auckland, C., Aydin, A., Baker, D., Baker, P., Bashton, M., Crown, M., Hartley, J., Henderson, J., Jones, H., McCann, C., Nelson, A., Smith, D., Yew, W., Young, G., Hollis, A., Stanley, W. 1 Dec 2022, In: Scientific Reports
